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Scientific Reports Biology Table of Contents e-alert: 17 April 2018

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  17 April 2018    
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Biological Sciences

Comparative biogeography of the gut microbiome between Jinhua and Landrace pigs ▶


Yingping Xiao, Fanli Kong, Yun Xiang et al.


Proteomic analysis at the sites of clinical infection with invasive Streptococcus pyogenes ▶


Robert J. Edwards, Marta Pyzio, Magdalena Gierula et al.


Contribution of DA Signaling to Appetitive Odor Perception in a Drosophila Model ▶


Yuhan Pu, Melissa Megan Masserant Palombo, Ping Shen


Immune-cognitive system connectivity reduces bumblebee foraging success in complex multisensory floral environments ▶


Melissa W. Mobley, Robert J. Gegear


Hippophae rhamnoides as novel phytogenic feed additive for broiler chickens at high altitude cold desert ▶


Sahil Kalia, Vijay K. Bharti, Arup Giri et al.


Increasing salinity drastically reduces hatching success of crustaceans from depression wetlands of the semi-arid Eastern Cape Karoo region, South Africa ▶


Annah Mabidi, Matthew S. Bird, Renzo Perissinotto


On the use of Parylene C polymer as substrate for peripheral nerve electrodes ▶


Natàlia de la Oliva, Matthias Mueller, Thomas Stieglitz et al.


Automatic gain control of neural coupling during cooperative hand movements ▶


F. A. Thomas, V. Dietz, M. Schrafl-Altermatt


Deciphering the mechanism of action of 089, a compound impairing the fungal cell cycle ▶


Irene Stefanini, Lisa Rizzetto, Damariz Rivero et al.


Dynamic transcriptomic analysis of Ischemic Injury in a Porcine Pre-Clinical Model mimicking Donors Deceased after Circulatory Death ▶


Sebastien Giraud, Clara Steichen, Geraldine Allain et al.


Cystoid edema, neovascularization and inflammatory processes in the murine Norrin-deficient retina ▶


Susanne C. Beck, Marcus Karlstetter, Marina Garcia Garrido et al.


Function of alanine racemase in the physiological activity and cariogenicity of Streptococcus mutans ▶


Shiyu Liu, Yuan Wei, Xuedong Zhou et al.


Defective immuno- and thymoproteasome assembly causes severe immunodeficiency ▶


Irina Treise, Eva M. Huber, Tanja Klein-Rodewald et al.


APOBEC3-mediated restriction of RNA virus replication ▶


Aleksandra Milewska, Eveline Kindler, Philip Vkovski et al.


Muscle synergies are consistent across level and uphill treadmill running ▶


Akira Saito, Aya Tomita, Ryosuke Ando et al.


Metabolomics and pathway analyses to characterize metabolic alterations in pregnant dairy cows on D 17 and D 45 after AI ▶


Y. S. Guo, J. Z. Tao


Carboxythiazole is a key microbial nutrient currency and critical component of thiamin biosynthesis ▶


Ryan W. Paerl, Erin M. Bertrand, Elden Rowland et al.


Co-exposure to benzo[a]pyrene and ethanol induces a pathological progression of liver steatosis in vitro and in vivo ▶


Simon Bucher, Arnaud Tête, Normand Podechard et al.


Morphological characterization of NG2 glia and their association with neuroglial cells in the 3-nitropropionic acid–lesioned striatum of rat ▶


Xuyan Jin, Tae-Ryong Riew, Hong Lim Kim et al.


Inhibition of the NLRP3-inflammasome as a potential approach for neuroprotection after stroke ▶


Saifudeen Ismael, Liang Zhao, Sanaz Nasoohi et al.


A fast and cost-effective method for apolipoprotein E isotyping as an alternative to APOE genotyping for patient screening and stratification ▶


Olga Calero, Luis García-Albert, Andrés Rodríguez-Martín et al.


Detection and characterisation of coronaviruses in migratory and non-migratory Australian wild birds ▶


Anthony Chamings, Tiffanie M. Nelson, Jessy Vibin et al.


CD4 T cell autophagy is integral to memory maintenance ▶


Diane Murera, Florent Arbogast, Johan Arnold et al.


hTERT gene knockdown enhances response to radio- and chemotherapy in head and neck cancer cell lines through a DNA damage pathway modification ▶


Wojciech Barczak, Agnieszka Sobecka, Pawel Golusinski et al.


Spinal cord gray matter segmentation using deep dilated convolutions ▶


Christian S. Perone, Evan Calabrese, Julien Cohen-Adad


Photoreceptor-induced RPE phagolysosomal maturation defects in Stargardt-like Maculopathy (STGD3) ▶


Camille Dejos, Sharee Kuny, Woo Hyun Han et al.


Water-stress induced downsizing of light-harvesting antenna complex protects developing rice seedlings from photo-oxidative damage ▶


Vijay K. Dalal, Baishnab C. Tripathy


Transverse dielectrophoretic-based DNA nanoscale confinement ▶


Sara Mahshid, Jia Lu, Abrar A. Abidi et al.


Cyclin-dependent kinase 5 mediates pleiotrophin-induced endothelial cell migration ▶


Evgenia Lampropoulou, Ioanna Logoviti, Marina Koutsioumpa et al.


Metabarcoding analysis of strongylid nematode diversity in two sympatric primate species ▶


Barbora Pafčo, Dagmar Čížková, Jakub Kreisinger et al.


Hydrogen sulfide inhibits epithelial-mesenchymal transition in peritoneal mesothelial cells ▶


Shengnan Cheng, Ying Lu, Yuanyuan Li et al.


The C-terminal HRET sequence of Kv1.3 regulates gating rather than targeting of Kv1.3 to the plasma membrane ▶


Orsolya Voros, Orsolya Szilagyi, András Balajthy et al.


Small de novo CNVs as biomarkers of parental exposure to low doses of ionizing radiation of caesium-137 ▶


Emília Oliveira Alves Costa, Irene Plaza Pinto, Macks Wendhell Gonçalves et al.


Characterization and non-parametric modeling of the developing serum proteome during infancy and early childhood ▶


Niina Lietzén, Lu Cheng, Robert Moulder et al.


Validation of ultrasound bioimaging to predict worm burden and treatment efficacy in preclinical filariasis drug screening models ▶


Amy E. Marriott, Hanna Sjoberg, Hayley Tyrer et al.


Disposable all-printed electronic biosensor for instantaneous detection and classification of pathogens ▶


Shawkat Ali, Arshad Hassan, Gul Hassan et al.


Genome wide analysis of the transition to pathogenic lifestyles in Magnaporthales fungi ▶


Ning Zhang, Guohong Cai, Dana C. Price et al.


The effect of ageing and osteoarthritis on the mechanical properties of cartilage and bone in the human knee joint ▶


Abby E. Peters, Riaz Akhtar, Eithne J. Comerford et al.


Novel crab predator causes marine ecosystem regime shift ▶


J. Kotta, T. Wernberg, H. Jänes et al.


Effects of green tea on miRNA and microbiome of oral epithelium ▶


Guy R. Adami, Christy C. Tangney, Jessica L. Tang et al.


Drought and plant neighbourhood interactively determine herbivore consumption and performance ▶


Bastien Castagneyrol, Xoaquín Moreira, Hervé Jactel


Prospective Comparison of QFT-GIT and T-SPOT.TB Assays for Diagnosis of Active Tuberculosis ▶


Fengjiao Du, Li Xie, Yonghong Zhang et al.


A new way of producing pediocin in Pediococcus acidilactici through intracellular stimulation by internalized inulin nanoparticles ▶


Whee-Soo Kim, Jun-Yeong Lee, Bijay Singh et al.


The Effects of Sampling Location and Predictor Point Estimate Certainty on Posterior Support in Bayesian Phylogeographic Generalized Linear Models ▶


Daniel Magee, Jesse E. Taylor, Matthew Scotch


Myotube elasticity of an amyotrophic lateral sclerosis mouse model ▶


Béla Varga, Marta Martin-Fernandez, Cécile Hilaire et al.


Local tissue manipulation via a force- and pressure-controlled AFM micropipette for analysis of cellular processes ▶


Phillip Roder, Carsten Hille


Percutaneous Closure of Left Atrial Appendage significantly affects Lipidome Metabolism ▶


G. Yücel, M. Behnes, C. Barth et al.


Development of a mouse model for the visual and quantitative assessment of lymphatic trafficking and function by in vivo imaging ▶


Yoshihisa Yamaji, Shinsuke Akita, Hidetaka Akita et al.


Versatile and efficient chromatin pull-down methodology based on DNA triple helix formation ▶


Asako Isogawa, Robert P. Fuchs, Shingo Fujii


Perturbation of the yeast mitochondrial lipidome and associated membrane proteins following heterologous expression of Artemia-ANT ▶


Emily Chen, Michael A. Kiebish, Justice McDaniel et al.


Effect of Concentrated Growth Factor (CGF) on the Promotion of Osteogenesis in Bone Marrow Stromal Cells (BMSC) in vivo ▶


Xia Chen, Jian Wang, Li Yu et al.


Dietary supplementation with flaxseed meal and oat hulls modulates intestinal histomorphometric characteristics, digesta- and mucosa-associated microbiota in pigs ▶


S. P. Ndou, H. M. Tun, E. Kiarie et al.


High-resolution computed tomographic analysis of tooth replacement pattern of the basal neoceratopsian Liaoceratops yanzigouensis informs ceratopsian dental evolution ▶


Yiming He, Peter J Makovicky, Xing Xu et al.


Response to climate change of montane herbaceous plants in the genus Rhodiola predicted by ecological niche modelling ▶


Jianling You, Xiaoping Qin, Sailesh Ranjitkar et al.


Refined protocols of tamoxifen injection for inducible DNA recombination in mouse astroglia ▶


Hannah M. Jahn, Carmen V. Kasakow, Andreas Helfer et al.


Discovery of the World’s Smallest Terrestrial Pteridophyte ▶


Mitesh Patel, Mandadi Narsimha Reddy


Unraveling the compromised biomechanical performance of type 2 diabetes- and Roux-en-Y gastric bypass bone by linking mechanical-structural and physico-chemical properties ▶


Carlos Marin, Georgios Papantonakis, Kathleen Sels et al.


Emotion and anxiety potentiate the way attention alters visual appearance ▶


Antoine Barbot, Marisa Carrasco


Understanding physical (in-) activity, overweight, and obesity in childhood: Effects of congruence between physical self-concept and motor competence ▶


T. Utesch, D. Dreiskämper, R. Naul et al.


Diversity and bioactive potential of culturable fungal endophytes of Dysosma versipellis; a rare medicinal plant endemic to China ▶


Xiaoming Tan, Yaqin Zhou, Xiaolei Zhou et al.


Hidden complexity in the ontogeny of sexual size dimorphism in male-larger beetles ▶


Tomáš Vendl, Petr Šípek, Ondřej Kouklík et al.


Compositional characteristics of human peripheral TRBV pseudogene rearrangements ▶


Bin Shi, Long Ma, Xiaoyan He et al.


piRNA-like small RNAs are responsible for the maternal-specific knockdown in the ascidian Ciona intestinalis Type A ▶


Teruki Satoh, Takako Iitsuka, Akira Shiraishi et al.


Quantitative Methods to Monitor RNA Biomarkers in Myotonic Dystrophy ▶


Marzena Wojciechowska, Krzysztof Sobczak, Piotr Kozlowski et al.


Efficient differentiation of cardiomyocytes and generation of calcium-sensor reporter lines from nonhuman primate iPSCs ▶


Yongshun Lin, Huimin Liu, Michael Klein et al.


Effects of different doses of granulocyte colony-stimulating factor mobilization therapy on ischemic cardiomyopathy ▶


Rongchong Huang, Haichen Lv, Kang Yao et al.


Genetic diversity and phylogenetic characteristics of Chinese Tibetan and Yi minority ethnic groups revealed by non-CODIS STR markers ▶


Guanglin He, Zheng Wang, Xing Zou et al.


Endogenous reference RNAs for microRNA quantitation in formalin-fixed, paraffin-embedded lymph node tissue ▶


Katsushige Inada, Yasushi Okoshi, Yukiko Cho-Isoda et al.


Impact of sequencing depth on the characterization of the microbiome and resistome ▶


Rahat Zaheer, Noelle Noyes, Rodrigo Ortega Polo et al.


Endothelial Cell Phenotypes are Maintained During Angiogenesis in Cultured Microvascular Networks ▶


Jessica M. Motherwell, Christopher R. Anderson, Walter L. Murfee


Duplication and diversification of lectin receptor-like kinases (LecRLK) genes in soybean ▶


Ping-Li Liu, Yuan Huang, Peng-Hao Shi et al.


Field validation of recombinant antigen immunoassays for diagnosis of Lassa fever ▶


Matthew L. Boisen, Jessica N. Hartnett, Jeffrey G. Shaffer et al.


Comparative analysis of naive, primed and ground state pluripotency in mouse embryonic stem cells originating from the same genetic background ▶


Sabitri Ghimire, Margot Van der Jeught, Jitesh Neupane et al.


3D artificial round section micro-vessels to investigate endothelial cells under physiological flow conditions ▶


Riccardo Sfriso, Shengye Zhang, Colette Andrea Bichsel et al.


Altered connection properties of important network hubs may be neural risk factors for individuals with primary insomnia ▶


Xuming Liu, Jiyong Zheng, Bi-Xia Liu et al.


Effect of dietary probiotics on the semen traits and antioxidative activity of male broiler breeders ▶


Takio Inatomi, Konosuke Otomaru


A cell surface display fluorescent biosensor for measuring MMP14 activity in real-time ▶


Alexander Braun, Matthew J. Farber, Zachary A. Klase et al.


Protein docking refinement by convex underestimation in the low-dimensional subspace of encounter complexes ▶


Shahrooz Zarbafian, Mohammad Moghadasi, Athar Roshandelpoor et al.


Embryonic Exposure to Valproic Acid Impairs Social Predispositions of Newly-Hatched Chicks ▶


Paola Sgadò, Orsola Rosa-Salva, Elisabetta Versace et al.


Low-level mitochondrial heteroplasmy modulates DNA replication, glucose metabolism and lifespan in mice ▶


Misa Hirose, Paul Schilf, Yask Gupta et al.


Metformin Decreases the Incidence of Pancreatic Ductal Adenocarcinoma Promoted by Diet-induced Obesity in the Conditional KrasG12D Mouse Model ▶


Hui-Hua Chang, Aune Moro, Caroline Ei Ne Chou et al.


Intentional communication between wild bonnet macaques and humans ▶


Adwait Deshpande, Shreejata Gupta, Anindya Sinha


Effects of scavenger receptors-1 class A stimulation on macrophage morphology and highly modified advanced glycation end product-protein phagocytosis ▶


Shinichi Hamasaki, Takuro Kobori, Yui Yamazaki et al.


Beyond dose: Pulsed antibiotic treatment schedules can maintain individual benefit while reducing resistance ▶


Christopher M. Baker, Matthew J. Ferrari, Katriona Shea


Isolation and characterization of a multifunctional flavonoid glycosyltransferase from Ornithogalum caudatum with glycosidase activity ▶


Shuai Yuan, Sen Yin, Ming Liu et al.


Evidence of exposure of domestic pigs to Highly Pathogenic Avian Influenza H5N1 in Nigeria ▶


Clement Meseko, Anja Globig, Jeremiah Ijomanta et al.


Structure and co-occurrence patterns in microbial communities under acute environmental stress reveal ecological factors fostering resilience ▶


Dinka Mandakovic, Claudia Rojas, Jonathan Maldonado et al.


Information about peer choices shapes human risky decision-making ▶


Livia Tomova, Luiz Pessoa


A mega-analysis of expression quantitative trait loci (eQTL) provides insight into the regulatory architecture of gene expression variation in liver ▶


Tobias Strunz, Felix Grassmann, Javier Gayán et al.


Yeast aconitase mitochondrial import is modulated by interactions of its C and N terminal domains and Ssa1/2 (Hsp70) ▶


Reut Ben-Menachem, Katherine Wang, Orly Marcu et al.


Asymmetric ommatidia count and behavioural lateralization in the ant Temnothorax albipennis ▶


Edmund R. Hunt, Ciara Dornan, Ana B. Sendova-Franks et al.


Accurate estimation of 5-methylcytosine in mammalian mitochondrial DNA ▶


Shigeru Matsuda, Takehiro Yasukawa, Yuriko Sakaguchi et al.


Spatial Encoding of Translational Optic Flow in Planar Scenes by Elementary Motion Detector Arrays ▶


Julien Lecoeur, Emily Baird, Dario Floreano


Shorter sleep duration and better sleep quality are associated with greater tissue density in the brain ▶


Hikaru Takeuchi, Yasuyuki Taki, Rui Nouchi et al.


Environment-dependent striatal gene expression in the BACHD rat model for Huntington disease ▶


Arianna Novati, Thomas Hentrich, Zinah Wassouf et al.


Genetic homogeneity of goat malaria parasites in Asia and Africa suggests their expansion with domestic goat host ▶


Morakot Kaewthamasorn, Mika Takeda, Tawee Saiwichai et al.


An Automatic Diagnosis Method of Facial Acne Vulgaris Based on Convolutional Neural Network ▶


Xiaolei Shen, Jiachi Zhang, Chenjun Yan et al.


High-resolution behavioral mapping of electric fishes in Amazonian habitats ▶


Manu S. Madhav, Ravikrishnan P. Jayakumar, Alican Demir et al.


Pannexin 1 sustains the electrophysiological responsiveness of retinal ganglion cells ▶


Galina Dvoriantchikova, Alexey Pronin, Sarah Kurtenbach et al.


Crystal structure of Bacillus cereus flagellin and structure-guided fusion-protein designs ▶


Meong Il Kim, Choongdeok Lee, Jaewan Park et al.


Bumblebee olfactory learning affected by task allocation but not by a trypanosome parasite ▶


Callum D. Martin, Michelle T. Fountain, Mark J. F. Brown


Proteomic profiling of human cancer pseudopodia for the identification of anti-metastatic drug candidates ▶


Sunkyu Choi, Aditya M. Bhagwat, Rasha Al Mismar et al.


Satellite DNA in Vicia faba is characterized by remarkable diversity in its sequence composition, association with centromeres, and replication timing ▶


Laura Ávila Robledillo, Andrea Koblížková, Petr Novák et al.


Deciphering the dark proteome of Chikungunya virus ▶


Ankur Singh, Ankur Kumar, Rakhi Yadav et al.


A standardized flow cytometry network study for the assessment of circulating endothelial cell physiological ranges ▶


Paola Lanuti, Pasquale Simeone, Gianluca Rotta et al.


Pro-inflammatory cytokines activate hypoxia-inducible factor 3α via epigenetic changes in mesenchymal stromal/stem cells ▶


Francesca Cuomo, Antonietta Coppola, Chiara Botti et al.


Intrinsically-disordered N-termini in human parechovirus 1 capsid proteins bind encapsidated RNA ▶


Shabih Shakeel, James D. Evans, Mark Hazelbaker et al.


Identification of Morus notabilis MADS-box genes and elucidation of the roles of MnMADS33 during endodormancy ▶


Yiwei Luo, Hongshun Li, Zhonghuai Xiang et al.


Toxicity of enrofloxacin, copper and their interactions on soil microbial populations and ammonia-oxidizing archaea and bacteria ▶


Ziyan Wei, Jinhua Wang, Lusheng Zhu et al.


Alternative SNP detection platforms, HRM and biosensors, for varietal identification in Vitis vinifera L. using F3H and LDOX genes ▶


Sónia Gomes, Cláudia Castro, Sara Barrias et al.


Activation of the DnaK-ClpB Complex is Regulated by the Properties of the Bound Substrate ▶


Jose Angel Fernández-Higuero, Alejandra Aguado, Judit Perales-Calvo et al.


Changing patterns of human migrations shaped the global population structure of Mycobacterium tuberculosis in France ▶


Maxime Barbier, Oana Dumitrescu, Catherine Pichat et al.


Snf1/AMPK is involved in the mitotic spindle alignment in Saccharomyces cerevisiae ▶


Farida Tripodi, Roberta Fraschini, Monica Zocchi et al.


The role of stabilizing and communicating symptoms given overlapping communities in psychopathology networks ▶


Tessa F. Blanken, Marie K. Deserno, Jonas Dalege et al.


On the wrong track: ocean acidification attracts larval fish to irrelevant environmental cues ▶


Tullio Rossi, Jennifer C. A. Pistevos, Sean D. Connell et al.


A Bowman-Birk type chymotrypsin inhibitor peptide from the amphibian, Hylarana erythraea ▶


Luyao Zhang, Xiaoling Chen, Yue Wu et al.


Nucleosomes of polyploid trophoblast giant cells mostly consist of histone variants and form a loose chromatin structure ▶


Koji Hayakawa, Kanae Terada, Tomohiro Takahashi et al.


An estradiol-independent BDNF-NPY cascade is involved in the antidepressant effect of mechanical acupuncture instruments in ovariectomized rats ▶


Su Yeon Seo, Ji-Young Moon, Suk-Yun Kang et al.


De novo assembly and analysis of the Artemisia argyi transcriptome and identification of genes involved in terpenoid biosynthesis ▶


Miaomiao Liu, Jinhang Zhu, Shengbing Wu et al.


Highly Interactive Brain–Computer Interface Based on Flicker-Free Steady-State Motion Visual Evoked Potential ▶


Chengcheng Han, Guanghua Xu, Jun Xie et al.


The value of radial endobronchial ultrasound-guided bronchial brushing in peripheral non-squamous non-small cell lung cancer ▶


Kai-Lun Yu, Tzu-Hsiu Tsai, Chao-Chi Ho et al.


Mucin gel assembly is controlled by a collective action of non-mucin proteins, disulfide bridges, Ca2+ -mediated links, and hydrogen bonding ▶


Oliver W. Meldrum, Gleb E. Yakubov, Mauricio R. Bonilla et al.


Neurofibromin knockdown in glioma cell lines is associated with changes in cytokine and chemokine secretion in vitro ▶


Matthew D. Wood, Joydeep Mukherjee, Russell O. Pieper


Catalytically active inclusion bodies of L-lysine decarboxylase from E. coli for 1,5-diaminopentane production ▶


Ramona Kloss, Michael H. Limberg, Ursula Mackfeld et al.


Poultry hatcheries as potential reservoirs for antimicrobial-resistant Escherichia coli: A risk to public health and food safety ▶


Kamelia M. Osman, Anthony D. Kappell, Mohamed Elhadidy et al.


Canine NAPEPLD-associated models of human myelin disorders ▶


K. M. Minor, A. Letko, D. Becker et al.


Low-intensity repetitive transcranial magnetic stimulation requires concurrent visual system activity to modulate visual evoked potentials in adult mice ▶


Kalina Makowiecki, Andrew Garrett, Alan R. Harvey et al.


Phylogeny, biogeography and methodology: a meta-analytic perspective on heterogeneity in adult marine turtle survival rates ▶


Joseph B. Pfaller, Milani Chaloupka, Alan B. Bolten et al.


Bacterial Pore-Forming Toxins Promote the Activation of Caspases in Parallel to Necroptosis to Enhance Alarmin Release and Inflammation During Pneumonia ▶


Norberto Gonzalez-Juarbe, Kelley M. Bradley, Ashleigh N. Riegler et al.


Chasing genetic structure in coralligenous reef invertebrates: patterns, criticalities and conservation issues ▶


Federica Costantini, Filippo Ferrario, Marco Abbiati


The sequence of cortical activity inferred by response latency variability in the human ventral pathway of face processing ▶


Jo-Fu Lotus Lin, Juan Silva-Pereyra, Chih-Che Chou et al.


Impact of a vegan diet on the human salivary microbiota ▶


Tue H. Hansen, Timo Kern, Emilie G. Bak et al.


Switching between individual and collective motility in B lymphocytes is controlled by cell-matrix adhesion and inter-cellular interactions ▶


Javier Rey-Barroso, Daniel S. Calovi, Maud Combe et al.

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