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The ISME Journal - Table of Contents alert Volume 12 Issue 2

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The ISME Journal
TABLE OF CONTENTS

Volume 12, Issue 2 (February 2018)

In this issue
Commentary
Perspective
Original Articles
Short Communications

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Commentary

Top

Uncultivated microbes—in need of their own nomenclature?

Aharon Oren and George M Garrity

ISME J 2018 12: 309-311; advance online publication, October 20, 2017; 10.1038/ismej.2017.188

Full Text

Perspective

Top

Build your own soil: exploring microfluidics to create microbial habitat structures OPEN

Kristin Aleklett, E Toby Kiers, Pelle Ohlsson, Thomas S Shimizu, Victor EA Caldas and Edith C Hammer

ISME J 2018 12: 312-319; advance online publication, November 14, 2017; 10.1038/ismej.2017.184

Abstract | Full Text

Original Articles

Top

Function-related replacement of bacterial siderophore pathways OPEN

Hilke Bruns, Max Crüsemann, Anne-Catrin Letzel, Mohammad Alanjary, James O McInerney, Paul R Jensen, Stefan Schulz, Bradley S Moore and Nadine Ziemert

ISME J 2018 12: 320-329; advance online publication, August 15, 2017; 10.1038/ismej.2017.137

Abstract | Full Text

Acetoclastic Methanosaeta are dominant methanogens in organic-rich Antarctic marine sediments

Stephanie A Carr, Florence Schubotz, Robert B Dunbar, Christopher T Mills, Robert Dias, Roger E Summons and Kevin W Mandernack

ISME J 2018 12: 330-342; advance online publication, October 17, 2017; 10.1038/ismej.2017.150

Abstract | Full Text

Cyanophage-encoded lipid desaturases: oceanic distribution, diversity and function OPEN

Sheila Roitman, Ellen Hornung, José Flores-Uribe, Itai Sharon, Ivo Feussner and Oded Béjà

ISME J 2018 12: 343-355; advance online publication, October 13, 2017; 10.1038/ismej.2017.159

Abstract | Full Text

Individual-level trait diversity predicts phytoplankton community properties better than species richness or evenness

Simone Fontana, Mridul Kanianthara Thomas, Mirela Moldoveanu, Piet Spaak and Francesco Pomati

ISME J 2018 12: 356-366; advance online publication, October 3, 2017; 10.1038/ismej.2017.160

Abstract | Full Text

Bacteria alone establish the chemical basis of the wood-fall chemosynthetic ecosystem in the deep-sea

Dimitri Kalenitchenko, Nadine Le Bris, Laetitia Dadaglio, Erwan Peru, Arnaud Besserer and Pierre E Galand

ISME J 2018 12: 367-379; advance online publication, October 6, 2017; 10.1038/ismej.2017.163

Abstract | Full Text

Mycorrhizal fungi show regular community compositions in natural ecosystems

Erik Verbruggen, Merlin Sheldrake, Luke D Bainard, Baodong Chen, Tobias Ceulemans, Johan De Gruyter and Maarten Van Geel

ISME J 2018 12: 380-385; advance online publication, October 6, 2017; 10.1038/ismej.2017.169

Abstract | Full Text

Microbiome and infectivity studies reveal complex polyspecies tree disease in Acute Oak Decline OPEN

Sandra Denman, James Doonan, Emma Ransom-Jones, Martin Broberg, Sarah Plummer, Susan Kirk, Kelly Scarlett, Andrew R Griffiths, Maciej Kaczmarek, Jack Forster, Andrew Peace, Peter N Golyshin, Francis Hassard, Nathan Brown, John G Kenny and James E McDonald

ISME J 2018 12: 386-399; advance online publication, October 13, 2017; 10.1038/ismej.2017.170

Abstract | Full Text

The plant circadian clock influences rhizosphere community structure and function

Charley J Hubbard, Marcus T Brock, Linda TA van Diepen, Loïs Maignien, Brent E Ewers and Cynthia Weinig

ISME J 2018 12: 400-410; advance online publication, October 20, 2017; 10.1038/ismej.2017.172

Abstract | Full Text

Metabolic shift at the class level sheds light on adaptation of methanogens to oxidative environments

Zhe Lyu and Yahai Lu

ISME J 2018 12: 411-423; advance online publication, November 14, 2017; 10.1038/ismej.2017.173

Abstract | Full Text

Characterization of ecologically diverse viruses infecting co-occurring strains of cosmopolitan hyperhalophilic Bacteroidetes OPEN

Judith Villamor, María Dolores Ramos-Barbero, Pedro González-Torres, Toni Gabaldón, Ramón Rosselló-Móra, Inmaculada Meseguer, Manuel Martínez-García, Fernando Santos and Josefa Antón

ISME J 2018 12: 424-437; advance online publication, November 3, 2017; 10.1038/ismej.2017.175

Abstract | Full Text

Bacterial secretion of D-arginine controls environmental microbial biodiversity

Laura Alvarez, Alena Aliashkevich, Miguel A de Pedro and Felipe Cava

ISME J 2018 12: 438-450; advance online publication, October 13, 2017; 10.1038/ismej.2017.176

Abstract | Full Text

Soil microbial diversity drives the priming effect along climate gradients: a case study in Madagascar

Kanto Razanamalala, Tantely Razafimbelo, Pierre-Alain Maron, Lionel Ranjard, Nicolas Chemidlin, Mélanie Lelièvre, Samuel Dequiedt, Volaniaina H Ramaroson, Claire Marsden, Thierry Becquer, Jean Trap, Eric Blanchart and Laetitia Bernard

ISME J 2018 12: 451-462; advance online publication, October 17, 2017; 10.1038/ismej.2017.178

Abstract | Full Text

Clonal expansion behind a marine diatom bloom

Maria Valeria Ruggiero, Domenico D'Alelio, Maria Immacolata Ferrante, Mariano Santoro, Laura Vitale, Gabriele Procaccini and Marina Montresor

ISME J 2018 12: 463-472; advance online publication, November 21, 2017; 10.1038/ismej.2017.181

Abstract | Full Text

Degradation of hydrogen peroxide at the ocean’s surface: the influence of the microbial community on the realized thermal niche of Prochlorococcus

Lanying Ma, Benjamin C Calfee, J Jeffrey Morris, Zackary I Johnson and Erik R Zinser

ISME J 2018 12: 473-484; advance online publication, October 31, 2017; 10.1038/ismej.2017.182

Abstract | Full Text

Contrasting the relative importance of species sorting and dispersal limitation in shaping marine bacterial versus protist communities

Wenxue Wu, Hsiao-Pei Lu, Akash Sastri, Yi-Chun Yeh, Gwo-Ching Gong, Wen-Chen Chou and Chih-Hao Hsieh

ISME J 2018 12: 485-494; advance online publication, November 10, 2017; 10.1038/ismej.2017.183

Abstract | Full Text

Electron carriers in microbial sulfate reduction inferred from experimental and environmental sulfur isotope fractionations

Christine B Wenk, Boswell A Wing and Itay Halevy

ISME J 2018 12: 495-507; advance online publication, October 31, 2017; 10.1038/ismej.2017.185

Abstract | Full Text

Stress response of a marine ammonia-oxidizing archaeon informs physiological status of environmental populations

Wei Qin, Shady A Amin, Rachel A Lundeen, Katherine R Heal, Willm Martens-Habbena, Serdar Turkarslan, Hidetoshi Urakawa, Kyle C Costa, Erik L Hendrickson, Tony Wang, David AC Beck, Sonia M Tiquia-Arashiro, Fred Taub, Andrew D Holmes, Neeraja Vajrala, Paul M Berube, Todd M Lowe, James W Moffett, Allan H Devol, Nitin S Baliga, Daniel J Arp, Luis A Sayavedra-Soto, Murray Hackett, E Virginia Armbrust, Anitra E Ingalls and David A Stahl

ISME J 2018 12: 508-519; advance online publication, October 20, 2017; 10.1038/ismej.2017.186

Abstract | Full Text

The impact of elevated CO2 on Prochlorococcus and microbial interactions with ‘helper’ bacterium Alteromonas

Gwenn MM Hennon, J Jeffrey Morris, Sheean T Haley, Erik R Zinser, Alexander R Durrant, Elizabeth Entwistle, Terje Dokland and Sonya T Dyhrman

ISME J 2018 12: 520-531; advance online publication, October 31, 2017; 10.1038/ismej.2017.189

Abstract | Full Text

Phage mobility is a core determinant of phage–bacteria coexistence in biofilms OPEN

Matthew Simmons, Knut Drescher, Carey D Nadell and Vanni Bucci

ISME J 2018 12: 531-543; advance online publication, November 10, 2017; 10.1038/ismej.2017.190

Abstract | Full Text

Changes in bacterioplankton community structure during early lake ontogeny resulting from the retreat of the Greenland Ice Sheet OPEN

Hannes Peter, Erik Jeppesen, Luc De Meester and Ruben Sommaruga

ISME J 2018 12: 544-555; advance online publication, October 31, 2017; 10.1038/ismej.2017.191

Abstract | Full Text

In situ metabolomic- and transcriptomic-profiling of the host-associated cyanobacteria Prochloron and Acaryochloris marina

Lars Behrendt, Jean-Baptiste Raina, Adrian Lutz, Witold Kot, Mads Albertsen, Per Halkjær-Nielsen, Søren J Sørensen, Anthony WD Larkum and Michael Kühl

ISME J 2018 12: 556-567; advance online publication, October 31, 2017; 10.1038/ismej.2017.192

Abstract | Full Text

Cyanobacterial photosynthesis under sulfidic conditions: insights from the isolate Leptolyngbya sp. strain hensonii OPEN

Trinity L Hamilton, Judith M Klatt, Dirk de Beer and Jennifer L Macalady

ISME J 2018 12: 568-584; advance online publication, January 12, 2018; 10.1038/ismej.2017.193

Abstract | Full Text

Immune loss as a driver of coexistence during host-phage coevolution OPEN

Jake L Weissman, Rayshawn Holmes, Rodolphe Barrangou, Sylvain Moineau, William F Fagan, Bruce Levin and Philip L F Johnson

ISME J 2018 12: 585-597; advance online publication, January 12, 2018; 10.1038/ismej.2017.194

Abstract | Full Text

What intrinsic and extrinsic factors explain the stoichiometric diversity of aquatic heterotrophic bacteria?

Casey M Godwin and James B Cotner

ISME J 2018 12: 598-609; advance online publication, November 24, 2017; 10.1038/ismej.2017.195

Abstract | Full Text

Specific substrate-driven changes in human faecal microbiota composition contrast with functional redundancy in short-chain fatty acid production

Nicole Reichardt, Maren Vollmer, Grietje Holtrop, Freda M Farquharson, Daniel Wefers, Mirko Bunzel, Sylvia H Duncan, Janice E Drew, Lynda M Williams, Graeme Milligan, Thomas Preston, Douglas Morrison, Harry J Flint and Petra Louis

ISME J 2018 12: 610-622; advance online publication, December 1, 2017; 10.1038/ismej.2017.196

Abstract | Full Text

Microbial life on a sand grain: from bulk sediment to single grains OPEN

David Probandt, Thilo Eickhorst, Andreas Ellrott, Rudolf Amann and Katrin Knittel

ISME J 2018 12: 623-633; advance online publication, December 1, 2017; 10.1038/ismej.2017.197

Abstract | Full Text

Short Communications

Top

Soil protist communities form a dynamic hub in the soil microbiome

Wu Xiong, Alexandre Jousset, Sai Guo, Ida Karlsson, Qingyun Zhao, Huasong Wu, George A Kowalchuk, Qirong Shen, Rong Li and Stefan Geisen

ISME J 2018 12: 634-638; advance online publication, October 13, 2017; 10.1038/ismej.2017.171

Abstract | Full Text

Recent expansion of heat-activated retrotransposons in the coral symbiont Symbiodinium microadriaticum OPEN

Jit Ern Chen, Guoxin Cui, Xin Wang, Yi Jin Liew and Manuel Aranda

ISME J 2018 12: 639-643; advance online publication, October 20, 2017; 10.1038/ismej.2017.179

Abstract | Full Text

Dispersal timing determines the importance of priority effects in bacterial communities

Pavel Svoboda, Eva S Lindström, Omneya Ahmed Osman and Silke Langenheder

ISME J 2018 12: 644-646; advance online publication, October 20, 2017; 10.1038/ismej.2017.180

Abstract | Full Text

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